_plots_depreciated

Legacy plotting functions from _plotting/_plots_depreciated.py.

The misspelled module name is part of the current public surface and is still re-exported by _plotting/__init__.py. These functions exist for backward compatibility, but the preferred APIs now live in newer plotting modules.

Legacy entry points

• volcano_plot_sns_single_comparison_generic

• qqplot_pvalues

• plot_paired_point_anndata

• plot_column_of_bar_h_2groups_GEX_adata

• plot_column_of_bar_h_2groups_with_l2fc_dotplot_GEX_adata

• l2fc_pvalue_dotplot_protein_metabolite

• l2fc_pvalue_dotplot_gex

Preferred replacements

• volcano_plot_sns_single_comparison_generic -> volcano_plot_generic

• qqplot_pvalues -> qqplot

• plot_paired_point_anndata -> timeseries_paired_datapoints

• plot_column_of_bar_h_2groups_GEX_adata -> barh_column

• plot_column_of_bar_h_2groups_with_l2fc_dotplot_GEX_adata -> barh_l2fc_dotplot_column

• l2fc_pvalue_dotplot_protein_metabolite and l2fc_pvalue_dotplot_gex -> l2fc_dotplot_single or the newer composite column builders

Important differences from the modern APIs

• The legacy volcano function uses padj_col rather than the current pvalue_col.

• The legacy QQ helper predates the newer dict-based qqplot(...) return contract.

• The older column-plot helpers are narrower and less configurable than the current _column_plots.py functions.

Recommendation

Use this module only when maintaining older scripts that already depend on it. For new work, prefer _plots.py and _column_plots.py.

Coverage note

This page documents current source code. There do not appear to be dedicated tests for the legacy module.